SNP Profiles matching SPA 9 [COL]

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	TT	AC	GG	CT	AC	CG	AA	CT	AA	GG	AA	CC	TT
1._RUQ_691	_	_	AC	GG	CT	AC	CG	AA	CT	AA	_	AA	CC	TT
2._MATINA_2_/8	GG	TT	AC	GG	CT	AC	-	AA	CT	AA	GG	AA	CC	TT
3._NA_45	GG	TT	AC	GG	CT	AA	CG	AG	CT	AA	GG	AA	CC	TT
4._GC-01-111-6-08	GG	TT	AC	GG	CT	AA	CG	AG	CT	AA	GG	AA	CC	TT
5._NA_45	GG	TT	AC	GG	_	AA	CG	AG	CT	AA	GG	AA	CC	TT
6._GC-01-111-6-08	GG	TT	AC	GG	_	AA	CG	AG	CT	AA	GG	AA	CC	TT
7._NA_45	GG	TT	AC	GG	CC	AA	CG	AG	CT	AA	GG	AA	CC	TT
8._NA_45	GG	TT	AC	GG	CC	AA	CG	AG	CT	AA	GG	AA	CC	TT
9._NA_45	GG	TT	AC	GG	CC	AA	CG	AG	CT	AA	GG	AA	CC	TT
10._NA_45	GG	TT	AC	GG	CC	AA	CG	AG	CT	AA	GG	AA	CC	TT
11._NA_45	GG	TT	AC	GG	CC	AA	CG	AG	CT	AA	GG	AA	CC	TT
12._NA_45	GG	TT	AC	GG	CC	AA	CG	AG	CT	AA	GG	AA	CC	TT
13._GC-01-111-6-08	GG	TT	AC	GG	CC	AA	CG	AG	CT	AA	GG	AA	CC	TT
14._GC-01-111-6-08	GG	TT	AC	GG	CC	AA	CG	AG	CT	AA	GG	AA	CC	TT
15._GC-01-111-6-08	GG	TT	AC	GG	CC	AA	CG	AG	CT	AA	GG	AA	CC	TT
16._GC-01-111-6-08	GG	TT	AC	GG	CC	AA	CG	AG	CT	AA	GG	AA	CC	TT
17._GC-01-111-6-08	GG	TT	AC	GG	CC	AA	CG	AG	CT	AA	GG	AA	CC	TT
18._GC-01-111-6-08	GG	TT	AC	GG	CC	AA	CG	AG	CT	AA	GG	AA	CC	TT
19._MARPER_28	-	TT	-	GG	-	-	-	AA	CC	-	GG	AA	CC	TT
20._MARPER_38	-	TT	-	GG	-	-	-	AA	CC	-	GG	AA	CC	CT
21._RUQ_1577	GG	TT	CC	GG	CC	AC	CG	AG	CT	AA	GG	AA	CC	CT
22._NA_33	GG	TT	CC	GG	CC	AC	GG	AG	CT	AA	GG	AA	CC	CT
23._NA_45	GG	TT	AC	GG	CC	AA	CG	AG	CT	AA	GG	AA	CC	TT
24._POUND_25_/A	GG	TT	CC	TT	CC	AC	CG	GG	CT	AA	GG	AA	CC	CT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	GG	AA	CC	AA	GG	CG	CC	CC	GG	AA	TT	AG	CC
1._RUQ_691	GG	GG	AA	CC	_	GG	CG	CC	_	_	_	_	AG	CC
2._MATINA_2_/8	GG	GG	AA	CC	AA	-	CG	CC	CC	GG	AA	TT	AG	CC
3._NA_45	GT	GG	AA	CC	AA	GG	CG	CC	CT	GG	AA	TT	AG	CC
4._GC-01-111-6-08	GT	GG	AA	CC	AA	GG	CG	CC	CT	GG	AA	TT	AG	CC
5._NA_45	GT	GG	AA	CC	AA	GG	CG	CC	CT	GG	AA	TT	AG	CC
6._GC-01-111-6-08	GT	GG	AA	CC	AA	GG	CG	CC	CT	GG	AA	TT	AG	CC
7._NA_45	GT	GG	AA	CC	AA	GG	CG	CC	CT	GG	AA	TT	AG	CC
8._NA_45	GT	GG	AA	CC	AA	GG	CG	CC	CT	GG	AA	TT	AG	CC
9._NA_45	GT	GG	AA	CC	AA	GG	CG	CC	CT	GG	AA	TT	AG	CC
10._NA_45	GT	GG	AA	CC	AA	GG	CG	CC	CT	GG	AA	TT	AG	CC
11._NA_45	GT	GG	AA	CC	AA	GG	CG	CC	CT	GG	AA	TT	AG	CC
12._NA_45	GT	GG	AA	CC	AA	GG	CG	CC	CT	GG	AA	TT	AG	CC
13._GC-01-111-6-08	GT	GG	AA	CC	AA	GG	CG	CC	CT	GG	AA	TT	AG	CC
14._GC-01-111-6-08	GT	GG	AA	CC	AA	GG	CG	CC	CT	GG	AA	TT	AG	CC
15._GC-01-111-6-08	GT	GG	AA	CC	AA	GG	CG	CC	CT	GG	AA	TT	AG	CC
16._GC-01-111-6-08	GT	GG	AA	CC	AA	GG	CG	CC	CT	GG	AA	TT	AG	CC
17._GC-01-111-6-08	GT	GG	AA	CC	AA	GG	CG	CC	CT	GG	AA	TT	AG	CC
18._GC-01-111-6-08	GT	GG	AA	CC	AA	GG	CG	CC	CT	GG	AA	TT	AG	CC
19._MARPER_28	-	GG	-	CC	AA	GG	-	CC	-	GG	AA	TT	GG	-
20._MARPER_38	-	GG	-	CC	AA	GG	-	CC	-	GG	AA	TT	GG	-
21._RUQ_1577	GG	GG	AA	CT	AG	GG	CG	CC	CC	GG	AA	TT	AG	CC
22._NA_33	GG	GG	AA	CT	AG	GG	CG	CC	CC	GG	AA	TT	AG	CC
23._NA_45	GT	GG	AA	CC	AA	GG	CG	CC	CT	GG	AA	TT	AG	CC
24._POUND_25_/A	GG	GG	AA	CC	AA	GT	CG	CC	CC	GG	AA	TT	AG	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	GG	AA	CC	CC	GT	TT	AC	TT	TT	CG	AA	CC	X_X	X_X
1._RUQ_691	_	_	_	_	GT	_	_	_	TT	CG	AA	_	X_X	X_X
2._MATINA_2_/8	GG	AA	CT	CC	GT	TT	AA	TT	TT	CG	AA	CC	X_X	X_X
3._NA_45	GG	AA	CC	CC	TT	CT	_	TT	TT	CG	AA	CC	X_X	X_X
4._GC-01-111-6-08	GG	AA	CC	CC	TT	CT	_	TT	TT	CG	AA	CC	X_X	X_X
5._NA_45	GG	AA	CC	CC	TT	CT	_	TT	TT	CG	AA	CC	X_X	X_X
6._GC-01-111-6-08	GG	AA	CC	CC	TT	CT	_	TT	TT	CG	AA	CC	X_X	X_X
7._NA_45	GG	AA	CC	CC	TT	CT	_	TT	TT	CG	AA	CC	X_X	X_X
8._NA_45	GG	AA	CC	CC	TT	CT	_	TT	TT	CG	AA	CC	X_X	X_X
9._NA_45	GG	AA	CC	CC	TT	CT	_	TT	TT	CG	AA	CC	X_X	X_X
10._NA_45	GG	AA	CC	CC	TT	CT	_	TT	TT	CG	AA	CC	X_X	X_X
11._NA_45	GG	AA	CC	CC	TT	CT	_	TT	TT	CG	AA	CC	X_X	X_X
12._NA_45	GG	AA	CC	CC	TT	CT	_	TT	TT	CG	AA	CC	X_X	X_X
13._GC-01-111-6-08	GG	AA	CC	CC	TT	CT	_	TT	TT	CG	AA	CC	X_X	X_X
14._GC-01-111-6-08	GG	AA	CC	CC	TT	CT	_	TT	TT	CG	AA	CC	X_X	X_X
15._GC-01-111-6-08	GG	AA	CC	CC	TT	CT	_	TT	TT	CG	AA	CC	X_X	X_X
16._GC-01-111-6-08	GG	AA	CC	CC	TT	CT	_	TT	TT	CG	AA	CC	X_X	X_X
17._GC-01-111-6-08	GG	AA	CC	CC	TT	CT	_	TT	TT	CG	AA	CC	X_X	X_X
18._GC-01-111-6-08	GG	AA	CC	CC	TT	CT	_	TT	TT	CG	AA	CC	X_X	X_X
19._MARPER_28	AG	AA	-	CC	-	TT	AA	-	TT	CC	AA	CC	X_X	X_X
20._MARPER_38	AG	AA	-	CC	-	TT	AA	-	TT	CG	AA	CC	X_X	X_X
21._RUQ_1577	GG	AA	CC	CC	GT	TT	AC	TT	TT	CC	AG	CC	X_X	X_X
22._NA_33	GG	AA	CC	CC	GT	TT	AC	TT	TT	CC	AA	CC	X_X	X_X
23._NA_45	GG	AA	CC	CC	TT	CT	CC	TT	TT	CG	AA	CC	X_X	X_X
24._POUND_25_/A	GG	AA	CC	CC	GT	TT	AC	TT	TT	CG	AA	CC	X_X	X_X

Input profile: SPA_9_[COL]

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 2 X1 Y17

Dapeng Zhang, 2016

1._SPA_16_[COL] RUQ_691

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._MATINA_2_/8

97.4 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B B106 T16

Dapeng Zhang, 2014

3._NA_45

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 9

Dapeng Zhang, 2016

4._NA_45 GC-01-111-6-08

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

5._NA_45

92.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 14 > F

Dapeng Zhang, 2016

6._NA_45 GC-01-111-6-08

92.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14 > FP3

7._NA_45

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 3 > FP

Dapeng Zhang, 2016

8._NA_45

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 11 > F

Dapeng Zhang, 2016

9._NA_45

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 1 > FP

Dapeng Zhang, 2016

10._NA_45

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 10

Dapeng Zhang, 2016

11._NA_45

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 4

Dapeng Zhang, 2016

12._NA_45

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

13._NA_45 GC-01-111-6-08

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

14._NA_45 GC-01-111-6-08

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

15._NA_45 GC-01-111-6-08

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

16._NA_45 GC-01-111-6-08

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

17._NA_45 GC-01-111-6-08

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

18._NA_45 GC-01-111-6-08

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP2

19._MARPER_28

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 647A

Dapeng Zhang, 2014

20._MARPER_38

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 167

Dapeng Zhang, 2014

21._NA_33 RUQ_1577

90 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

22._NA_33

90 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A D371 T2

Dapeng Zhang, 2016

23._NA_45

90 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 673

Dapeng Zhang, 2016

24._POUND_25_/A

90 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F452 T9

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520